Back

Protein Expression and Purification

Elsevier BV

Preprints posted in the last 30 days, ranked by how well they match Protein Expression and Purification's content profile, based on 11 papers previously published here. The average preprint has a 0.00% match score for this journal, so anything above that is already an above-average fit.

1
Crude Fucus vesiculosus fucoidan demonstrates superior SARS-CoV-2 antiviral activity compared to its pure form: binding kinetics and functional studies

Dudek, A.; Janapatla, R. P.; Chen, C. L.; Chiu, C. H.

2026-05-12 biochemistry 10.64898/2026.05.07.723385 medRxiv
Top 0.1%
0.4%
Show abstract

Fucoidans have been widely reported to show SARS-CoV-2 antiviral activity. In this study, we observed a striking difference in the inhibitory potency between two commercially available fucoidans: Fucus vesiculosus crude (Fvc) and pure (Fvp). SEC-MALS analysis revealed two molecular weight populations for Fvc (1098 kDa, 58.58 kDa) and one for Fvp (40.48 kDa). At micromolar concentrations of fucoidans, the binding affinities (KDs) of Fvc_1098 (223 nM) and Fvc_58 (4.27 {micro}M) for the amine-biotinylated SARS-CoV-2 receptor binding domain (RBD) were higher than that of Fvp (76.5 {micro}M). At nanomolar concentrations, binding was observed only to the Avi-tag-, but not amine-biotinylated RBDs, suggesting better accessibility of their binding sites. The association rates (kon) were faster for Fvc than for Fvp. Similarly, affinities of Fvc_1098 (23.4 nM) and Fvc_58 (4.48 M) for ACE2 were greater than that of Fvp (66.8 M), indicating that Fvc can bind directly to both RBD and ACE2. Fvc demonstrated enhanced inhibitory potency (IC50 = 58 g/mL) compared to Fvp (IC50 > 239 g/mL) in the pseudovirus entry assay and did not induce cytotoxicity in HEK293T cells. In conclusion, crude fucoidan with high fucose content and high molecular weight shows promising antiviral activity.

2
Improved crystallization and diffraction quality of Mycobacterium tuberculosis OmamC/Rv1363c upon heat treatment

Hynönen, M. J.; Venkatesan, R.

2026-05-04 biochemistry 10.64898/2026.04.30.722021 medRxiv
Top 0.1%
0.3%
Show abstract

Mycobacterium tuberculosis (Mtb), the causative agent of tuberculosis, can use host derived lipids as carbon and energy source for survival. Mammalian cell entry (Mce) associated membrane (Mam) proteins are important for the stability of lipid importing Mce complexes. Mtb has five homologs of Mam proteins referred as orphaned Mam (OmamA-E) proteins. A recent study suggested that OmamC (Rv1363c) is essential for the storage and utilization of lipids under starvation in Mtb. To understand the structure and interactions of OmamC, we generated a truncated soluble variant of OmamC (OmamC129-261). Here, we report on the challenges encountered during the crystallization and structure determination of OmamC129-261 and the strategies applied to overcome them. Despite the AlphaFold2 predicted model proving an initial molecular replacement solution, experimental phasing was necessary to determine the structure of OmamC129-261. Heat treatment of protein prior to crystallization setup removed partially unfolded protein present and played a critical role in enhancing the reproducibility and diffraction quality of OmamC129-261 crystals. Although reported earlier, it is not a widely used method. It is worth to try this method, especially, when faced with poor reproducibility and diffraction of crystals.

3
Ethanol-assisted core-shell microparticles for enzyme stabilization with precise size control

Yang, E.; Khongkomolsakul, W.; Dadmohammadi, Y.; Abbaspourrad, A.

2026-05-08 biochemistry 10.64898/2026.05.05.722948 medRxiv
Top 0.2%
0.1%
Show abstract

In vegetarian diets, phytate is known to disrupt the adsorption of minerals. Fortifying foods with phytase, a therapeutic enzyme known to mitigate phytate, might increase the uptake of important nutrients. Phytase is susceptible to environmental stress such as heat and acidic conditions encountered during food processing. Therefore, we developed and optimized a core-shell microparticle composed of a phytase-chitosan core and a shell consisting of cross-linked alginate-{kappa}-carrageenan. Ethanol was used to precipitate the microparticles, and the ethanol concentration was optimized along with the chitosan and phytase ratio and the alginate-carrageenan concentration, to form stable core-shell microparticles. The optimized core-shell microparticles have a loading capacity of 32.7% with a high encapsulation efficiency of 80.3% and uniform micro-size with a diameter of 3.2 {micro}m and a poly-dispersity index of 0.178. Loaded phytase retained 62.7% enzymatic activity after heat treatment and digestion conditions. These results indicate that core-shell microparticles are suitable for retaining enzyme activity within the food matrix under typical food processing conditions. HighlightsO_LIDevelopment of size-controlled core-shell microparticles to protect phytase C_LIO_LIPhytase-chitosan microparticles are surrounded by an alginate-{kappa}-carrageenan shell C_LIO_LIOptimization achieved 32.7% loading capacity with a uniform size of 3.2 {micro}m C_LIO_LICore-shell microparticles retained 62.7% enzyme activity after heat and digestion C_LIO_LIPhytase powder (2 mg) is required for a single maize meal C_LI

4
Unmasking Glycoforms: Lectin-Based Profiling and Functional Implications of Targeted Glycosylation Knockouts in CHO Cells

Abascal Ruiz, C.; Lim, S. L. Y.; Brink, J.; Carillo, S.; Casey, E.; Bones, J.; Jimenez del Val, I.

2026-05-13 cell biology 10.64898/2026.05.13.724788 medRxiv
Top 0.2%
0.1%
Show abstract

Monoclonal antibody (mAb) glycosylation is a critical quality attribute that is difficult to rationally engineer and rapidly assess during cell line development. Here, we investigate whether cell-surface glycosylation can serve as a predictive indicator of mAb product glycosylation following targeted glycogene engineering in CHO cells. Five key glycogenes (COSMC, FUT8, B4GALT1, ST3GAL4, ST6GAL1) were investigated in two mAb-producing CHO cell lines. Product glycan analysis revealed consistent, gene-specific effects across hosts, including loss of core fucosylation, and tuneable galactosylation and sialylation. Lectin-based surface profiling reliably reflected product outcomes for COSMC and FUT8 modifications but showed limited predictive power for galactosylation and 2,3-sialylation, highlighting glycosylation pathway redundancy and context dependence. This study provides the first systematic, cross-cell line evaluation of lectin-based cell-surface glycan profiling as a predictor of mAb product glycosylation, establishing its practical utility and inherent limitations for CHO glycoengineering workflows. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=118 SRC="FIGDIR/small/724788v1_ufig1.gif" ALT="Figure 1"> View larger version (26K): org.highwire.dtl.DTLVardef@6d5cfborg.highwire.dtl.DTLVardef@1f38e0aorg.highwire.dtl.DTLVardef@f25fa2org.highwire.dtl.DTLVardef@64a0dc_HPS_FORMAT_FIGEXP M_FIG C_FIG

5
Systematic characterization of the yeast secretome under diverse proteosynthetic stress conditions reveals secretion of functional ER chaperone BiP

Liu, S.; Schulz, B. L.

2026-05-22 biochemistry 10.64898/2026.05.21.727034 medRxiv
Top 0.3%
0.1%
Show abstract

The yeast secreted proteome plays critical biological roles and influences product and production parameters in industrial fermentation. Systematic profiling of the response of the yeast secretome to intrinsic and extrinsic factors is therefore essential for understanding these functions and for optimizing manufacturing processes. Here, we characterized the yeast secretome under diverse proteosynthetic stress conditions, including glycosylation deficiency, oxidative, reductive, and thermal stresses. The secretome was predominantly composed of conventionally secreted proteins, while a subset of proteins appeared to be secreted via unconventional pathways. Distinct secretome profiles were observed in response to different stressors, driven by a combination of altered intracellular proteomes, altered canonical secretion, and altered cell lysis and unconventional protein secretion, while reflecting the underlying metabolic state of the cells. Heat stress did not impact protein glycosylation but did cause similar protein misfolding stress to N-glycosylation deficiency. Intriguingly, canonically intracellular chaperone BiP was abundant in the secretome in particular stress conditions where its activity would be beneficial. BiP interacted with probable extracellular client proteins in vitro, consistent with it acting as a functional extracellular chaperone/holdase in conditions such as reductive stress in which client proteins could be misfolded outside the cell.

6
Biophysical and enzymatic comparison of Bacillus safensis and Bacillus subtilis malate dehydrogenase (MDH) enzymes

Zafiropoulo, H. R.; Thomas, J. E.; Cortez, N. R.; Apostol, K.; de Sa, A.; Khosravi, R.; Moore, L.; Berndsen, C. E.; Bibel, B.

2026-05-14 biochemistry 10.64898/2026.05.13.723581 medRxiv
Top 0.3%
0.1%
Show abstract

Species of Bacillus bacteria including Bacillus safensis and Bacillus subtilis are finding increasing uses in biotechnology and bioremediation, thanks in part to their metabolic robustness. Malate dehydrogenase (MDH) is at the heart of central metabolism and thus a better understanding of Bacillus MDH proteins could aid in the optimization of these applications. MDH of Bacillus spp. belong to the lactate dehydrogenase (LDH)-like class of MDHs, otherwise known as the MDH3 class. Despite wide prevalence in nature among prokaryotes and archaea, this typically homotetrameric class is understudied compared to the MDH1 and MDH2 classes found in eukaryotes. We therefore recombinantly expressed and purified MDH proteins from two societally relevant Bacillus spp.-B. safensis and B. subtilis-and characterized them biophysically (via Size Exclusion Chromatography-Small Angle X-ray Scattering (SEC-SAXS) and Differential Scanning Fluorimetry (DSF)) and enzymatically (via spectroscopic activity assays). As expected based on their high sequence identity, the two MDH orthologs had similar properties in most regards, including a tetrameric structure and high susceptibility to substrate inhibition. However, we uncovered differences in conditional thermal stability, in addition to subtle differences in enzymatic activity that offer insight into the workings of LDH-like MDH. Summary statementMalate dehydrogenase (MDH) is a fundamental metabolic enzyme, from microbes to mammals, yet comparably little is known about microbial MDH, especially MDH of the tetrameric MDH3 class. We compare the biophysical and enzymatic properties of two such enzymes from the societally relevant bacterial species Bacillus subtilis and Bacillus safensis, offering useful insight with potential biotechnological implications.

7
Equilibration-free cryopreservation of beef and bison semen

Yang, S.; Rajapaksha, K.; Zwiefelhofer, E.; Adams, G.; Anzar, M.

2026-05-16 cell biology 10.64898/2026.05.15.725595 medRxiv
Top 0.3%
0.0%
Show abstract

Conventional semen cryopreservation involves equilibration at 4{degrees}C and optimum freezing rates. We hypothesized that a cholesterol-based semen extender obviates the need for equilibration, minimizing total processing time for semen cryopreservation. Experiments were conducted to determine the effects of semen extender (egg yolk- or cholesterol-based) and freezing method (routine or fast) on post-thaw sperm characteristics and fertility of beef and bison semen. In Experiment 1, beef semen diluted in tris-egg yolk-glycerol (TEYG) or cholesterol-cyclodextrin tris-glycerol (CCTG) extender underwent routine or fast freezing method. Cholesterol from animal and plant origins were compared. The routine method included 90-min equilibration at 4{degrees}C and routine freezing (RE-RF, total time 97 min) whereas the fast method included no equilibration and fast freezing (NE-FF, total time 14 min). Post-thaw sperm quality was assessed by CASA, and in vitro fertilization. Post-thaw sperm motility was not affected by the origin of cholesterol (animal or plant), but was lowest in the TEYG NE-FF group (24% vs 43-51%, P < 0.05). In vitro cleavage and blastocyst development rates did not differ between RE-RF and NE-FF groups. In Experiment 2, bison semen was diluted in TEYG or plant-CCTG extender and frozen as in Experiment 1. Post-thaw sperm motility was lowest in the TEYG NE-FF group (10% vs 39-51%, P < 0.05). In Experiment 3, beef semen diluted in TEYG or plant-CCTG extender underwent either a routine (RE-RF) or modified freezing (NE-RF, total time 25 min) method. Post-thaw sperm characteristics did not differ between extenders but were greater using routine freezing (RE-RF) compared to the modified method of freezing (NE-RF). Pregnancy rates were similar between extenders (TEYG vs plant-CCTG) using the modified freezing method without equilibration and insemination at 72 h after progesterone device removal. In conclusion, beef and bison semen diluted in cholesterol-based extender may be cryopreserved without equilibration.

8
SEC Purified Monomeric Aβ42 Produces Reproducible and Reliable Ag-gregation Measurements

Saha, J.; Dindinger, J.; Ramamoorthy, A.

2026-05-15 biochemistry 10.64898/2026.05.12.724608 medRxiv
Top 0.4%
0.0%
Show abstract

The accumulation of amyloid-beta (A{beta}) plaques is a hallmark of Alzheimers disease (AD), with A{beta}42 representing the predominant and most aggregation-prone isoform. Reliable preparation of monomeric A{beta}42 is essential for investigating the kinetics and mechanisms of its aggregation into oligomers and fibrils. This study provides a direct comparison of two monomerization protocols for recombinantly expressed A{beta}42: one incorporating size-exclusion chromatography (SEC) and the other relying solely on chemical denaturation, using agents such as NaOH and NH4OH. A{beta}42 was produced in E. coli, purified through urea solubilization followed by HPLC, and subjected to monomerization via the respective methods. Monomeric preparations were evaluated using Thioflavin T (ThT) fluorescence to assess aggregation kinetics, TEM to detect fibrils and preformed aggregates, and NMR spectroscopy. SEC-isolated monomers displayed sigmoidal aggregation profiles in ThT assays, featuring distinct lag, growth, and plateau phases consistent with secondary nucleation-dominated models as determined by AmyloFit analysis. Increasing the initial peptide concentration resulted in higher fibril yields, which was further supported by TEM images showing extensive fibrillization following incubation. In contrast, non-SEC preparations containing pre-existing aggregates detectable by TEM and showed attenuated NMR signals, leading to impaired aggregation behavior. NaOH-denatured samples predominantly exhibited flat ThT curves, whereas NH4OH-denatured samples displayed extended lag phases. NH4OH performance better than NaOH, likely because its gradual pH neutralization reduced peptide structural perturbation. Overall, these findings demonstrate that SEC is critical for obtaining highly pure monomeric A{beta}42 and improving the reproducibility of aggregation assays, highlighting the importance of standardized monomer preparation protocols in AD research. O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=49 SRC="FIGDIR/small/724608v1_ufig1.gif" ALT="Figure 1"> View larger version (15K): org.highwire.dtl.DTLVardef@1a3b9caorg.highwire.dtl.DTLVardef@1fa85d2org.highwire.dtl.DTLVardef@67a83dorg.highwire.dtl.DTLVardef@1564f77_HPS_FORMAT_FIGEXP M_FIG C_FIG

9
A lipid-binding protein in black-legged tick saliva selectively recognizes Borrelia burgdorferi lipids

Shi, W. O.; MacMackin-Ingle, T.; Perez, M. W.; Griffith, W. P.; Chen, L.; Seshu, J.; Renthal, R.

2026-05-07 biochemistry 10.64898/2026.05.04.722819 medRxiv
Top 0.4%
0.0%
Show abstract

A proteomic analysis of Ixodes scapularis nymph saliva identified 252 proteins, including six tubular lipid-binding proteins (TULIPs). Comparing nymphs fed on mice that were uninfected or infected with Borrelia burgdorferi, twelve salivary proteins showed significant differences in the amounts detected, including XP_040079658.2, which we refer to as TULIP2. Considering the known immunity-related functions of some TULIPs, we expressed and purified TULIP2 from Escherichia coli and analyzed its interaction with B. burgdorferi lipids. The purification of TULIP2 from E. coli presented many obstacles, due to insolubility, which is consistent with previous reports from studies of other TULIP family members. The binding results showed specificity for B. burgdorferi lipids, with evidence for cholesteryl {beta}-galactoside as a major binding target. Molecular modeling of TULIP2 did not show any strong lipid binding sites. We used molecular dynamics simulation of TULIP2 to explore its conformational landscape by thermal unfolding. The earliest unfolding intermediate opened a hydrophobic pocket to which cholesteryl {beta}-galactoside was predicted to bind strongly. We propose that a specific lipid bilayer interaction with TULIP2 triggers the opening of the ligand-binding site.

10
Simple Electroporation of Chlamydomonas reinhardtii Strains with an Intact Cell Wall

Messmer, M.; de Carpentier, F.; Lam, E.; Hong, M.; Wakao, S.; Schroda, M.; Niyogi, K. K.

2026-05-05 molecular biology 10.64898/2026.04.30.721989 medRxiv
Top 0.4%
0.0%
Show abstract

Chlamydomonas reinhardtii is a model green alga extensively used to study photosynthesis and cilia using molecular biology and genetics. Electroporation is a very common technique to transform DNA into the nuclear genome, which is essential to generate mutant collections and express transgenes. Here, we describe a simple, fast, and efficient protocol to transform strains with an intact cell wall. It achieves a good transformation efficiency without cell wall digestion or use of commercial kits and is compatible with the widely available Gene Pulser electroporation system. Key featuresO_LIHigh transformation efficiency of Chlamydomonas reinhardtii strains with an intact cell wall. C_LIO_LIFaster than currently available electroporation protocols. C_LI

11
Scene perception-memory pairing extends to superior parietal cortex

Tang, R. N.; Panek, D.; Barkoff, L. H.; Scrivener, C. L.; Silson, E. H.; Steel, A.

2026-05-09 neuroscience 10.64898/2026.05.08.723871 medRxiv
Top 0.5%
0.0%
Show abstract

Visual scene analysis relies on a set of scene-selective regions in posterior cerebral cortex (OPA, PPA, MPA), each paired with an anterior memory-responsive counterpart (LPMA, VPMA, MPMA). The interaction between these pairs of regions is thought to integrate visual input with mnemonic context. Recently, a fourth scene-perception area in superior parietal cortex (SPPA/PIGS) was identified, with a proposed role in visually-guided navigation. Whether this region also has an anterior paired memory region is currently unknown. Across two independent fMRI datasets (total N=24, 14 females) using static or dynamic stimuli and distinct memory tasks, we show that recalling visual scenes evokes robust responses in a region (referred to here as SPMA/PIGS-mem) immediately anterior and dorsal to SPPA/PIGS. During resting-state fMRI, SPPA/PIGS preferentially coupled with the other scene-perception areas, while SPMA/PIGS-mem preferentially coupled with the other place memory areas. At the whole-brain level, seed-based connectivity revealed that SPPA/PIGS sits at the confluence of four processing streams spanning regions implicated in egocentric scene perception, map-based navigation, perspective taking, and goal-directed movement. These findings extend the perception-memory motif associated with visual scene processing to a fourth cortical surface. The ubiquitous anatomical coupling between scene-perception and memory processes reflects the importance of this interaction for flexible, context-grounded navigation.

12
Neuroanatomical differences between early bilingual and monolingual children

Eden, G. F.; Coutinho, M. R.

2026-05-09 neuroscience 10.64898/2026.05.08.722956 medRxiv
Top 0.5%
0.0%
Show abstract

Prior studies have reported inconsistent results for neuroanatomical differences between early bilinguals and monolinguals. These studies primarily measured gray matter volume (GMV), involved small samples, and prioritized adults. Few studies of early bilinguals have measured cortical thickness (CT), which offers more anatomical specificity. It remains unclear whether results derived from differing metrics and approaches (e.g., vertex-versus parcel-wise analyses) converge. Using data from the Adolescent Brain Cognitive DevelopmentSM (ABCD) Study, we compared neuroanatomy between large groups of early cultural Spanish-English bilingual and English monolingual children (N = 1,209) matched on age, pubertal status, sex, handedness, socioeconomic status (SES), and nonverbal reasoning. Whole-brain voxel-based morphometry revealed areas of greater and of lesser GMV in bilinguals than monolinguals across all lobes. Vertex-wise CT analyses similarly identified widespread differences, with bilinguals showing areas of both thicker and thinner cortex. We contextualized these findings with parcel-wise CT analyses (average CT values), utilizing two atlases of differing spatial granularity. Parcel-wise results showed good correspondence with vertex-wise findings when implementing the more fine-grained atlas (Destrieux), but use of the coarser atlas (Desikan-Killiany) provided results that led to different conclusions. Finally, we tested for interaction effects between bilingualism and SES on CT and found several regions where differences between bilinguals and monolinguals in CT were modulated by SES. Together, these findings indicate that early bilingualism is associated with extensive neuroanatomical differences relative to monolinguals during childhood, and that these results can vary as a function of neuroanatomical metric, analysis approach, atlas granularity, and SES. Research HighlightsEarly Spanish-English bilingual and monolingual children differ in gray matter volume and cortical thickness across multiple brain regions. Cortical thickness differences between bilinguals and monolinguals cannot be firmly attributed to adaptations associated with language or executive control. Socioeconomic status modulates cortical differences between early bilinguals and monolinguals, revealing unique thickness patterns for those with lower versus higher SES backgrounds. Parcel-wise between-group cortical thickness results are affected by atlas choice and can influence the interpretation of the findings.

13
Representational similarity of hemodynamic brain responses to written and spoken words increases when learning to read

Maruo, K.; Kessler, R.; Huettig, F.; Skeide, M. A.

2026-05-09 neuroscience 10.64898/2026.05.08.723790 medRxiv
Top 0.5%
0.0%
Show abstract

Learning to read requires linking auditory and visual information, yet how the developing brain maps information across sensory modalities remains poorly understood. To shed light on this topic we employed functional MRI to investigate hemodynamic brain responses during spoken and written word or pseudoword recognition in 61 primary school children with different levels of reading experience. Audiovisual representational similarity of activation patterns in the inferior frontal gyrus, inferior parietal lobule, superior temporal gyrus, and temporo-occipital cortex, increased linearly with school grade and this effect was largest in the left posterior superior temporal gyrus. Our results suggest that learning to read is related to a progressively increasing similarity of auditory and visual word representations within canonical language areas.

14
Understanding the mechanisms of lateral parietalmemory modulation in Mild Cognitive Impairment

Slayton, M. A.; McAllister, M. A.; Finch, E. B.; Gillette, K.; Li, Y.; Wang, Y.; Harris, A. P.; Rothrock, J. M.; Peterchev, A. V.; Liu, A.; Cabeza, R.; Davis, S. W.

2026-05-09 neuroscience 10.64898/2026.05.08.723648 medRxiv
Top 0.5%
0.0%
Show abstract

The application of transcranial magnetic stimulation (TMS) to lateral parietal cortex has shown promise in improving episodic memory in older adults with Mild Cognitive Impairment (MCI). Previous work has suggested that such improvements are achieved by activating hippocampus at a distance with TMS, though this explanation is incomplete. We hypothesized that the mnemonic benefits arise from an additional mechanism: the modulation of semantic representations. Nineteen participants with amnestic MCI received either active intermittent theta-burst stimulation (iTBS) to angular gyrus or control vertex stimulation over three consecutive days while viewing object stimuli and completing relational memory encoding tasks during fMRI, followed by conceptual and perceptual recognition memory tests. We found that active TMS (relative to control TMS) significantly modulated conceptual memory performance. Using Representational Similarity Analysis with semantic embeddings derived from a large language model, we examined how TMS affects neural representations in inferior parietal lobule and hippocampus. We found that TMS enhanced semantic representational strength in inferior parietal lobule and reduced representational strength in hippocampus. Surprisingly, both effects supported successful memory. Neural pattern similarity analyses suggested that reduced hippocampal similarity supported successful memory, perhaps by promoting pattern separation mechanisms. These findings demonstrate that parietal TMS modulates semantic processing in a region-specific manner, by strengthening semantic integration at the stimulation site while promoting representational differentiation in medial temporal regions. This work advances our mechanistic understanding of memory neuromodulation and has implications for the optimization of therapeutic interventions in age-related memory disorders. Significance StatementTranscranial Magnetic Stimulation (TMS) applied to parietal cortex can improve memory in patients with Mild Cognitive Impairment (MCI), a population at high risk for Alzheimers Disease, yet the mechanisms underlying this benefit remain poorly understood. Using fMRI and Representational Similarity Analysis (RSA), we examined how TMS alters the neural representation of semantic stimulus information in parietal cortex and hippocampus during memory encoding. Our results show that TMS selectively modulates semantic representations at the stimulation site and in hippocampus, and that these representational changes predict memory improvement. These findings advance our mechanistic understanding of parietal memory neuromodulation and lay the groundwork for more targeted and effective TMS-based interventions for age-related memory disorders.

15
Adolescent Stress Exposure: Behavioral Consequences and Molecular Mechanisms in Corticolimbic Networks

Cotella, E. M.; Moloney, R. D.; Mahbod, P.; Martelle, S. E.; Morano, R. L.; Packard, B. A.; Herman, J. P.

2026-05-09 animal behavior and cognition 10.64898/2026.05.08.723933 medRxiv
Top 0.5%
0.0%
Show abstract

IntroductionAdolescence is a sensitive developmental period during which chronic stress can induce lasting adaptations in corticolimbic circuits involved in stress regulation, cognition, and emotional behavior. We examined the long-term behavioral, endocrine, and molecular consequences of adolescent chronic variable stress (CVS) in male and female rats, focusing on the infralimbic cortex (IL) and basolateral amygdala (BLA) MethodsSprague Dawley rats of both sexes were exposed to CVS during late adolescence and evaluated in adulthood after an extensive recovery period. Behavioral testing included cued fear conditioning and extinction recall, delayed spatial win-shift, novel object recognition, Morris water maze, three-chamber social behavior, and passive avoidance. HPA-axis reactivity to acute restraint was assessed. Targeted qPCR was used to measure stress-related gene expression in the IL and BLA immediately after stress or after a 5-week recovery period ResultsAdolescent CVS did not cause generalized cognitive impairment, but instead produced selective, sex-specific effects. Females had reduced HPA responses to acute stress and mild deficits in delayed spatial win-shift performance, together with long-term IL changes in genes related to adrenergic signaling, plasticity, and GABA clearance. Males showed enhanced Morris water maze probe retention, weaker novel object discrimination, altered passive avoidance with marked inter-individual variability, and enhanced social preference. At the molecular level, males exhibited long-term upregulation of Fkbp5 in IL and downregulation of PACAP, 1D adrenergic receptor, and proenkephalin in BLA, whereas females showed delayed PACAP upregulation in BLA DiscussionAdolescent CVS induces persistent, sex- and region-specific recalibration of corticolimbic function, supporting distinct patterns of vulnerability and resilience, rather than uniform stress pathology.

16
Wolves in black: multiple introgressions and natural selection may explain melanism in Italian wolves

Fabbri, G.; Battilani, D.; Mattucci, F.; Galaverni, M.; Stronen, A. V.; Musiani, M.; Godinho, R.; Lobo, D.; Scandura, M.; Randi, E.; Fabbri, E.; Caniglia, R.

2026-05-09 genomics 10.64898/2026.05.08.723698 medRxiv
Top 0.5%
0.0%
Show abstract

Hybridisation between wild and domestic taxa can favour the spread of domestic alleles into wild populations through backcrossing. The complex interplay of random genetic drift, recombination, and selection can shape the fate of introgressed alleles. Maladaptive domestic variants are likely to be purged by natural selection, but others may persist across generations. It has long been known that the Apennine Italian wolf population, exposed to large numbers of free-ranging dogs, has experienced extensive introgression. The unusually high frequency of black wolves observed in Italy, compared to other European populations, may parallel patterns documented in North American wolves, where the melanistic KB allele at the CBD103 gene, of domestic origin, has spread over thousands of years of introgression. We tested whether the KB mutation entered the peninsular Italian wolf population via hybridisation and spread through adaptive introgression. Genome-wide analyses of black and wild-type (grey-coated) Apennine wolves showed no clear signatures of recent dog ancestry in most melanistic animals. Our ancestry reconstruction approaches identified two distinct KB haplogroups of domestic origin, suggesting multiple introgression events. Notably, we found molecular evidence consistent with balancing selection on the KB haplotypes, whose functional role, nonetheless, warrants further research. Therefore, the microevolutionary genomic and ecological consequences of wolf-dog hybridisation in Italy should be carefully investigated to inform appropriate science-based conservation management strategies.

17
Cortical reconstruction and anatomical parcellation of high-resolution multi-modal postmortem ex vivo MRI of the human infant brain

Khandelwal, P.; Young, S.; Xi Ngo, N.; Yushkevich, P. A.; van der Kouwe, A.; Haynes, R. L.; Kinney, H. C.; Zollei, L.

2026-05-09 neuroscience 10.64898/2026.05.07.722301 medRxiv
Top 0.5%
0.0%
Show abstract

High-resolution postmortem (ex vivo) magnetic resonance imaging enables detailed examination of brain anatomy at spatial scales not achievable in vivo and provides a unique opportunity to link morphometric measurements with the underlying pathology. Despite these advantages, robust computational tools for automated anatomical segmentation and cortical surface reconstruction remain limited, particularly in postmortem infant brains. Incomplete myelination, thinner cortical ribbons, small-scale neuroanatomy, as well as an evolving tissue contrast combined with fixation-induced signal alterations and variability in postmortem preparation make standard neuroimaging pipelines unusable for postmortem infant MRI. In this work, we introduce a one-of-its-kind multi-modal high-resolution postmortem infant MRI dataset and a unified computational framework that combines deep learning-based volumetric segmentation with surface-based cortical reconstruction and anatomical parcellation in native subject space resolution. To address the pronounced domain shift inherent to postmortem MRI, we develop a postmortem-specific synthetic data generation engine (PostSynth) that explicitly models fixation-driven postmortem imaging characteristics. In particular, we incorporate postmortem-specific altered gray-white matter contrast, laminar cortical intensity heterogeneity, specimen-specific bias fields, and background signal characteristics associated with immersion media: phenomena not typically observed in in vivo data or captured by generic contrast-agnostic synthesis methods. We benchmark our framework against a set of widely used contrast-agnostic and foundational brain segmentation models, demonstrating improved anatomical consistency and segmentation performance in high-resolution postmortem infant data. The code is publicly available as part of the purple-mri package.

18
Metabolic Coherence of the Mouse Brain

Liu, Z.; Ma, X.; Ribas, R. A.; Medina, T.; Quinones, S.; Son, J.; Wu, L.; Ryan, A. M.; Shedlock, C.; Ziani, B.; Barco-Caiaffa, V.; Rao, N.; Titus, A.; Larson, R.; Wong, K.; Vander Kooi, C. W.; Chandel, N. S.; Gentry, M. S.; Chen, L.; sun, r. c.

2026-05-09 neuroscience 10.64898/2026.05.07.723592 medRxiv
Top 0.5%
0.0%
Show abstract

The brains metabolic demands are well established, but how metabolism is coordinated across anatomically distinct regions remains poorly understood. Here, using matrix-assisted laser desorption/ionization (MALDI) imaging integrated with the Allen Brain Atlas and optimal transport-based computational analysis, we map the spatial metabolome across twelve major mouse brain divisions. We define an optimal-transport-derived inter-regional metabolite similarity metric and refer to it as metabolic coherence. This structure is largely preserved in an amyloid mouse model of Alzheimers disease despite widespread changes in individual metabolite and lipid levels. Individual metabolites and lipids shift in a coordinated manner across regions, sustaining inter-regional relationships even as absolute levels change in patterns indicative of mitochondrial dysfunction. To test whether the coherence metric is responsive to local intervention, we targeted the left hippocampus of mice from this model via lentiviral shHIF1 knockdown or neuronal AAV-mediated AOX expression. Both interventions were associated with metabolite normalization at the injection site. More importantly, normalization extended across distal regions sharing high metabolic similarity with the hippocampus and was accompanied by improved social memory in a single behavioral assay. Gene modulation and amyloid plaque reduction localized to the injection site.

19
A self-limiting orexin-habenula circuit for stress resilience

Yang, S. H.; Yang, E.; Jung, J. T.; Lee, J.; Pyeon, G. H.; Jo, Y. S.; Park, H. S.; Moon, J. W.; Park, J.-Y.; Boo, K.-J.; Lee, D.; Chun, S.; Yoo, H.; Lee, H. W.; Kim, H.

2026-05-09 neuroscience 10.64898/2026.05.07.722567 medRxiv
Top 0.5%
0.0%
Show abstract

Resilience requires neural systems that mobilise active coping during stress while limiting its persistence to preserve homeostasis under sustained challenge1-4. Here we identify a self-limiting orexin-habenula circuit in which lateral hypothalamic orexin neurons engage aromatic L-amino acid decarboxylase-expressing D-neurons (encoded by Ddc) in the lateral habenula via orexin receptor type 2 (OX2R)5-7. Activation of this pathway increased nucleus accumbens dopamine and promoted active coping and positive valence. Optotagging revealed rapid stress-evoked recruitment followed by post-stress suppression. In lateral habenula neurons, orexin peptides exerted dissociable effects: orexin-A engaged an OX2R-dependent inhibitory programme superimposed on a parallel inward current, whereas orexin-B did not reproduce this inhibitory profile and instead exerted a distinct membrane effect. Chronic stress disrupted this buffering system through coordinated inflammatory activation, promoter methylation and erosion of D-neuron identity and orexin responsiveness. Restoring orexin-A reversed behavioural and molecular deficits through OX2R-dependent suppression of nuclear factor kappa B signalling, preservation of Tet2 expression, and demethylation-linked maintenance of the Ddc programme. Together, these findings define a self-limiting orexin-habenula resilience circuit that enables adaptive coping while constraining stress-induced vulnerability.

20
Hippocampal representations of partner and novel individuals in monogamous California mice during pair bond formation

Hernandez Palacios, K.; Golam, O.; Siegelbaum, S. A.; Bendesky, A.

2026-05-09 neuroscience 10.64898/2026.05.08.723922 medRxiv
Top 0.5%
0.0%
Show abstract

The hippocampal CA2 region is critical for social novelty recognition memory--the discrimination of whether a conspecific is novel or familiar. However, its role in forming a memory of a pair-bonded mate is unknown. To examine how social memories of pair-bonded individuals are encoded, we sought to understand if CA2 and the neighboring CA1 region participate in the memorization and recognition of a pair-bonded mate in monogamous Peromyscus californicus (California mice). Here, we report that CA2 and CA1 show distinct changes in social encoding of an opposite sex conspecific following pair-bonding. Using multi-channel silicon probes, we recorded single units from CA2 and CA1 in freely behaving male mice before and after pair bond formation during interactions with novel and partner females. We found that the strength of CA2 representations of a novel female mouse weakened after pair bond formation, indicating that CA2 may be preferentially important for novelty detection. In contrast, CA1 demonstrated an increase in the strength of encoding a female partner after pair-bond formation, suggesting that CA1 may encode partner memory. These findings indicate that pair bonding shifts the discrimination of social information from CA2 to CA1.